PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.251830.1
Common NameCsa_3G172980, LOC101211278
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 547aa    MW: 59199.8 Da    PI: 7.3754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.251830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08363410455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cucsa.251830.1 363 SHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 410
                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-17357429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-10357414No hitNo description
Gene3DG3DSA:4.10.280.101.1E-16359427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.326359409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5363410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEKEFFMNDG GCSFYGMEIQ PNELNSSGGL LNPNWENSMD HSDLFESTLS SIVSSPANSH  60
IIGGGGGGGG GDNLMMRELI GRLGSICNSG EISPHSYIGG TNNNSTNTSC YNTPLNSPPK  120
LNLSSIMESQ IRGNLIPHHQ NLAPFSTDPG FAERAARFSC FGNRNLGGLN GQLGSNETQE  180
LSNRSMAGAG VESGKLSRVS SNKSFNIGGV GSPQMVVQEG DQSPVQKGNS MPIPNKKVSN  240
RFSRSSTPEN AGDSREGSSV SEQNPIGESG LKGKAETNTR KRKSVQTGQA KDVKAAVENH  300
EPNGKKIKPD EVTKKEIDGA KGKAEAKSSG DANQKQNNDS SKPPEPPKDY IHVRARRGQA  360
TDSHSLAERV RREKISKRMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL  420
ATVNPRMDFN METLVPKDIF KGPGSSSHTV YPMDSSVPQF AYDYQSMHVT PLHSGIPNGT  480
EKQFSVASAN DVMQRNLSGQ MTNGYNEVVN GIQISKFWED ELHTVVQMGY GQNQLQNAND  540
EMKSEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278283TRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147655.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A0A0L6390.0A0A0A0L639_CUCSA; Uncharacterized protein
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-63bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]